CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1031 rna-evm.model.Chr14.1031 Chr14 33087230 33087913 PREDICTED: Caveolin-1 GO:0070836 K12958
gene-evm.TU.Chr14.1032 rna-evm.model.Chr14.1032 Chr14 33096236 33097494 PREDICTED: von Hippel-Lindau disease tumor suppressor nan K03871
gene-evm.TU.Chr14.1033 rna-evm.model.Chr14.1033 Chr14 33100976 33102442 PREDICTED: Sulfiredoxin-1 GO:0032542;GO:0055114 K12260
gene-evm.TU.Chr14.1034 rna-evm.model.Chr14.1034 Chr14 33106621 33120499 PREDICTED: WD repeat-containing protein 31 GO:0005515 K24743
gene-evm.TU.Chr14.1035 rna-evm.model.Chr14.1035 Chr14 33124097 33126024 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr14.1037 rna-evm.model.Chr14.1037 Chr14 33159728 33160444 uncharacterized protein nan nan
gene-evm.TU.Chr14.1038 rna-evm.model.Chr14.1038 Chr14 33170302 33197384 PREDICTED: Atrial natriuretic peptide receptor 1 GO:0004672;GO:0005524;GO:0006468;GO:0009190;GO:0016020;GO:0016849;GO:0035556 K12323
gene-evm.TU.Chr14.1039 rna-evm.model.Chr14.1039 Chr14 33204070 33207188 uncharacterized protein nan nan
gene-evm.TU.Chr14.104 rna-evm.model.Chr14.104 Chr14 3478700 3500845 PREDICTED: 72 kDa inositol polyphosphate 5-phosphatase GO:0046856 K20278
gene-evm.TU.Chr14.1042 rna-evm.model.Chr14.1042 Chr14 33271609 33327131 PREDICTED: Neuronal calcium sensor 1 GO:0005509 K19932

For more detailed data, you can explore the Download section to access the full dataset.