CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.994 rna-evm.model.Chr13.994 Chr13 29102522 29108141 uncharacterized protein nan nan
gene-evm.TU.Chr13.996 rna-evm.model.Chr13.996 Chr13 29181771 29212332 PREDICTED: Cytosolic phospholipase A2 GO:0004620;GO:0009395 K16342
gene-evm.TU.Chr13.997 rna-evm.model.Chr13.997 Chr13 29227740 29236309 PREDICTED: Patched domain-containing protein 3 GO:0016020;GO:0016020;GO:0022857;GO:0055085 K24682
gene-evm.TU.Chr13.998 rna-evm.model.Chr13.998 Chr13 29253949 29263067 PREDICTED: Patched domain-containing protein 3 GO:0016020 K24682
gene-evm.TU.Chr13.999 rna-evm.model.Chr13.999 Chr13 29270552 29279443 PREDICTED: NXPE family member 4 nan K12021
gene-evm.TU.Chr14.1 rna-evm.model.Chr14.1 Chr14 12448 12647 PREDICTED: Hemicentin-1 nan K16857
gene-evm.TU.Chr14.10 rna-evm.model.Chr14.10 Chr14 252442 252924 PREDICTED: Protein GVQW3 nan K11433
gene-evm.TU.Chr14.1001 rna-evm.model.Chr14.1001 Chr14 32171921 32181238 uncharacterized protein nan K02104
gene-evm.TU.Chr14.1002 rna-evm.model.Chr14.1002 Chr14 32183571 32187647 uncharacterized protein nan K02104
gene-evm.TU.Chr14.1003 rna-evm.model.Chr14.1003 Chr14 32191183 32213250 PREDICTED: Protein spinster homolog 1 GO:0016020;GO:0055085 K23677

For more detailed data, you can explore the Download section to access the full dataset.