CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr14.1004 rna-evm.model.Chr14.1004.2 Chr14 32221564 32263559 PREDICTED: Homeobox protein extradenticle GO:0003677;GO:0003700;GO:0005634 K09355
gene-evm.TU.Chr14.1005 rna-evm.model.Chr14.1005 Chr14 32278319 32288083 PREDICTED: Endonuclease V GO:0004519;GO:0006281 K21813
gene-evm.TU.Chr14.1006 rna-evm.model.Chr14.1006 Chr14 32290142 32298704 PREDICTED: Kelch-like protein 24 GO:0005515 K10461
gene-evm.TU.Chr14.1007 rna-evm.model.Chr14.1007 Chr14 32305634 32307569 PREDICTED: cyclic GMP-AMP synthase [EC:2.7.7.86] nan K23092
gene-evm.TU.Chr14.1009 rna-evm.model.Chr14.1009 Chr14 32319695 32324421 PREDICTED: Monomeric sarcosine oxidase GO:0016491;GO:0055114 K00301
gene-evm.TU.Chr14.101 rna-evm.model.Chr14.101 Chr14 3422412 3425207 PREDICTED: NF-kappa-B-repressing factor GO:0003676 K26458
gene-evm.TU.Chr14.1010 rna-evm.model.Chr14.1010 Chr14 32329281 32335177 PREDICTED: Betaine--homocysteine S-methyltransferase 1 nan K00544
gene-evm.TU.Chr14.1013 rna-evm.model.Chr14.1013 Chr14 32351610 32352470 uncharacterized protein nan K01887
gene-evm.TU.Chr14.1014 rna-evm.model.Chr14.1014.1 Chr14 32357616 32419750 PREDICTED: Voltage-dependent calcium channel type A subunit alpha-1 GO:0005216;GO:0005245;GO:0005891;GO:0006811;GO:0016020;GO:0055085;GO:0070588 K04849
gene-evm.TU.Chr14.1015 rna-evm.model.Chr14.1015 Chr14 32444892 32528035 PREDICTED: Voltage-dependent calcium channel type A subunit alpha-1 nan K04857

For more detailed data, you can explore the Download section to access the full dataset.