CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1023 rna-evm.model.Chr1.1023 Chr1 31222406 31265500 PREDICTED: Protocadherin-9 GO:0005509;GO:0007156;GO:0016020 K16498
gene-evm.TU.Chr1.1024 rna-evm.model.Chr1.1024 Chr1 31334208 31344739 PREDICTED: Probable phosphoglycerate kinase GO:0004618;GO:0006096 K00927
gene-evm.TU.Chr1.1026 rna-evm.model.Chr1.1026 Chr1 31353446 31363270 PREDICTED: myosin heavy chain nan K23027
gene-evm.TU.Chr1.1027 rna-evm.model.Chr1.1027 Chr1 31367510 31376120 PREDICTED: Neurotrypsin GO:0005044;GO:0016020 K09624
gene-evm.TU.Chr1.1028 rna-evm.model.Chr1.1028 Chr1 31377215 31381888 PREDICTED: myosin heavy chain nan K19822
gene-evm.TU.Chr1.1029 rna-evm.model.Chr1.1029 Chr1 31385834 31407139 PREDICTED: Ganglioside GM2 activator GO:0006689;GO:0008047 K12383
gene-evm.TU.Chr1.103 rna-evm.model.Chr1.103 Chr1 3363001 3364980 uncharacterized protein nan nan
gene-evm.TU.Chr1.1030 rna-evm.model.Chr1.1030 Chr1 31416476 31432918 PREDICTED: PIH1 domain-containing protein 1 nan K25426
gene-evm.TU.Chr1.1031 rna-evm.model.Chr1.1031 Chr1 31438755 31452779 PREDICTED: DDB1- and CUL4-associated factor 6 GO:0005515 K11795
gene-evm.TU.Chr1.1032 rna-evm.model.Chr1.1032 Chr1 31455804 31466778 PREDICTED: Protein phosphatase 1K, mitochondrial GO:0003824;GO:0004722;GO:0006470 K17505

For more detailed data, you can explore the Download section to access the full dataset.