CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.970 rna-evm.model.Chr13.970 Chr13 28602986 28605166 uncharacterized protein nan K11126
gene-evm.TU.Chr13.971 rna-evm.model.Chr13.971 Chr13 28610678 28632200 PREDICTED: Kelch-like protein 29 GO:0005515 K10461
gene-evm.TU.Chr13.972 rna-evm.model.Chr13.972 Chr13 28639090 28640748 PREDICTED: DNA excision repair protein ERCC-6 nan nan
gene-evm.TU.Chr13.973 rna-evm.model.Chr13.973 Chr13 28656211 28679269 PREDICTED: Cactin GO:0005515 K25058
gene-evm.TU.Chr13.974 rna-evm.model.Chr13.974 Chr13 28682463 28690973 PREDICTED: Cilia- and flagella-associated protein 300 nan K24230
gene-evm.TU.Chr13.975 rna-evm.model.Chr13.975 Chr13 28698245 28704643 PREDICTED: Monocarboxylate transporter 12 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.977 rna-evm.model.Chr13.977 Chr13 28718043 28735937 uncharacterized protein nan K03286
gene-evm.TU.Chr13.978 rna-evm.model.Chr13.978 Chr13 28739888 28749107 PREDICTED: Zinc finger protein 728 nan K21755
gene-evm.TU.Chr13.979 rna-evm.model.Chr13.979 Chr13 28764050 28766919 PREDICTED: 5-hydroxytryptamine receptor GO:0004930;GO:0007186;GO:0016020 K04139
gene-evm.TU.Chr13.981 rna-evm.model.Chr13.981 Chr13 28788864 28792493 PREDICTED: Heparan-sulfate 6-O-sulfotransferase 1 GO:0008146;GO:0016020 K02514

For more detailed data, you can explore the Download section to access the full dataset.