CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.958 rna-evm.model.Chr13.958 Chr13 28252528 28293246 PREDICTED: ATP-dependent RNA helicase DDX3Y GO:0003676;GO:0005524 K17642
gene-evm.TU.Chr13.959 rna-evm.model.Chr13.959 Chr13 28299812 28304577 PREDICTED: Ras-related protein Rap-2c GO:0003924;GO:0005525;GO:0007165;GO:0016020 K07839
gene-evm.TU.Chr13.96 rna-evm.model.Chr13.96 Chr13 2660783 2695932 uncharacterized protein nan K00791
gene-evm.TU.Chr13.960 rna-evm.model.Chr13.960.1 Chr13 28312971 28340040 PREDICTED: Stimulator of interferon genes protein GO:0002218;GO:0005515;GO:0007165;GO:0032481 K12654
gene-evm.TU.Chr13.961 rna-evm.model.Chr13.961 Chr13 28349202 28364062 uncharacterized protein nan K26520
gene-evm.TU.Chr13.963 rna-evm.model.Chr13.963 Chr13 28481431 28483778 PREDICTED: IMP dehydrogenase [EC:1.1.1.205] nan K11703
gene-evm.TU.Chr13.966 rna-evm.model.Chr13.966 Chr13 28510314 28514388 PREDICTED: D(2) dopamine receptor GO:0004930;GO:0007186;GO:0016020 K04157
gene-evm.TU.Chr13.967 rna-evm.model.Chr13.967 Chr13 28524041 28549472 PREDICTED: Putative uncharacterized oxidoreductase YDR541C GO:0003824;GO:0050662 K17741
gene-evm.TU.Chr13.968 rna-evm.model.Chr13.968 Chr13 28555653 28578237 PREDICTED: Remodeling and spacing factor 1 GO:0006355;GO:0031213 K11657
gene-evm.TU.Chr13.969 rna-evm.model.Chr13.969 Chr13 28585570 28600985 PREDICTED: Fas apoptotic inhibitory molecule 1 GO:0043066 K01655

For more detailed data, you can explore the Download section to access the full dataset.