CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.946 rna-evm.model.Chr13.946 Chr13 27851851 27888767 PREDICTED: Monocarboxylate transporter 12 nan nan
gene-evm.TU.Chr13.947 rna-evm.model.Chr13.947 Chr13 27957853 27958152 uncharacterized protein nan nan
gene-evm.TU.Chr13.948 rna-evm.model.Chr13.948 Chr13 27985658 28012014 PREDICTED: interleukin 1 receptor accessory protein-like nan K05127
gene-evm.TU.Chr13.95 rna-evm.model.Chr13.95 Chr13 2655740 2656648 PREDICTED: Kruppel-like factor 18 nan K12331
gene-evm.TU.Chr13.950 rna-evm.model.Chr13.950 Chr13 28040098 28107313 PREDICTED: Neurogenic locus notch homolog protein 1 GO:0005509;GO:0005576;GO:0006030;GO:0008061 K02599
gene-evm.TU.Chr13.951 rna-evm.model.Chr13.951 Chr13 28098279 28099184 PREDICTED: oxysterol-binding protein-related protein 9/10/11 nan K26029
gene-evm.TU.Chr13.953 rna-evm.model.Chr13.953 Chr13 28140075 28142684 PREDICTED: necdin nan K24295
gene-evm.TU.Chr13.954 rna-evm.model.Chr13.954 Chr13 28150762 28173177 PREDICTED: COP9 signalosome complex subunit 6 GO:0005515 K12179
gene-evm.TU.Chr13.955 rna-evm.model.Chr13.955 Chr13 28176425 28184457 PREDICTED: THAP domain-containing protein 4 nan K23205
gene-evm.TU.Chr13.957 rna-evm.model.Chr13.957 Chr13 28241266 28245026 PREDICTED: Ragulator complex protein LAMTOR4 GO:0032008;GO:0071230;GO:0071986 K20399

For more detailed data, you can explore the Download section to access the full dataset.