CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.932 rna-evm.model.Chr13.932 Chr13 27383989 27384937 PREDICTED: E3 ubiquitin-protein ligase UBR2 [EC:2.3.2.27] nan nan
gene-evm.TU.Chr13.933 rna-evm.model.Chr13.933 Chr13 27409610 27495906 PREDICTED: Lysine-specific demethylase 6A nan K23742
gene-evm.TU.Chr13.934 rna-evm.model.Chr13.934 Chr13 27489810 27490820 PREDICTED: Transposable element Tc1 transposase GO:0003677;GO:0006313;GO:0015074 K07494
gene-evm.TU.Chr13.935 rna-evm.model.Chr13.935 Chr13 27510871 27542519 uncharacterized protein nan K13001
gene-evm.TU.Chr13.936 rna-evm.model.Chr13.936 Chr13 27547022 27553003 PREDICTED: M-phase phosphoprotein 8 nan K11365
gene-evm.TU.Chr13.937 rna-evm.model.Chr13.937 Chr13 27553207 27560364 uncharacterized protein nan K26802
gene-evm.TU.Chr13.939 rna-evm.model.Chr13.939 Chr13 27638475 27644131 uncharacterized protein nan K02174
gene-evm.TU.Chr13.940 rna-evm.model.Chr13.940 Chr13 27644093 27652200 uncharacterized protein nan K22076
gene-evm.TU.Chr13.941 rna-evm.model.Chr13.941 Chr13 27706872 27707656 PREDICTED: TatD DNase family protein [EC:3.1.21.-] GO:0016788 K03424
gene-evm.TU.Chr13.942 rna-evm.model.Chr13.942 Chr13 27765260 27766459 PREDICTED: dystonin nan K24489

For more detailed data, you can explore the Download section to access the full dataset.