CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.920 rna-evm.model.Chr13.920 Chr13 26777295 26797841 PREDICTED: protein FAM122A-like nan nan
gene-evm.TU.Chr13.921 rna-evm.model.Chr13.921 Chr13 26843181 26844464 PREDICTED: Extracellular tyrosine-protein kinase PKDCC GO:0004672;GO:0005524;GO:0006468 K17548
gene-evm.TU.Chr13.923 rna-evm.model.Chr13.923 Chr13 26875369 26881363 PREDICTED: Periostin nan K19519
gene-evm.TU.Chr13.924 rna-evm.model.Chr13.924 Chr13 26942562 26946122 PREDICTED: Rho guanine nucleotide exchange factor 7 nan K10913
gene-evm.TU.Chr13.925 rna-evm.model.Chr13.925 Chr13 26946155 26946595 PREDICTED: Rho guanine nucleotide exchange factor 7 nan K10913
gene-evm.TU.Chr13.926 rna-evm.model.Chr13.926 Chr13 26950888 26962475 PREDICTED: Phospholipid scramblase 3 GO:0017121;GO:0017128 nan
gene-evm.TU.Chr13.927_evm.TU.Chr13.928 rna-evm.model.Chr13.927_evm.model.Chr13.928 Chr13 26968534 27140063 PREDICTED: Serine/threonine-protein kinase PAK 1 GO:0004672;GO:0004674;GO:0005524;GO:0006468;GO:0042981 K04409
gene-evm.TU.Chr13.929 rna-evm.model.Chr13.929 Chr13 27198408 27199988 PREDICTED: CUG-BP- and ETR3-like factor nan K20427
gene-evm.TU.Chr13.93 rna-evm.model.Chr13.93 Chr13 2626257 2627468 PREDICTED: inner nuclear membrane protein Man1 GO:0008270 K21233
gene-evm.TU.Chr13.931 rna-evm.model.Chr13.931 Chr13 27195973 27300177 PREDICTED: cAMP-dependent protein kinase regulatory subunit nan K04739

For more detailed data, you can explore the Download section to access the full dataset.