CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.905 rna-evm.model.Chr13.905 Chr13 26330971 26414874 PREDICTED: Acyl-coenzyme A thioesterase 9, mitochondrial nan K17361
gene-evm.TU.Chr13.906 rna-evm.model.Chr13.906 Chr13 26433856 26444723 PREDICTED: Uncharacterized protein in mobD 3'region nan K02176
gene-evm.TU.Chr13.910 rna-evm.model.Chr13.910 Chr13 26522863 26538919 uncharacterized protein nan nan
gene-evm.TU.Chr13.912 rna-evm.model.Chr13.912 Chr13 26578987 26585036 PREDICTED: endoglucanase [EC:3.2.1.4] nan nan
gene-evm.TU.Chr13.913 rna-evm.model.Chr13.913 Chr13 26587802 26601029 PREDICTED: Allograft inflammatory factor 1 GO:0005509 K18617
gene-evm.TU.Chr13.915 rna-evm.model.Chr13.915 Chr13 26627540 26629612 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr13.916 rna-evm.model.Chr13.916 Chr13 26637269 26660168 PREDICTED: histone-lysine N-methyltransferase SETDB2 [EC:2.1.1.43] nan nan
gene-evm.TU.Chr13.917 rna-evm.model.Chr13.917 Chr13 26666488 26719547 PREDICTED: Remodeling and spacing factor 1 GO:0006355;GO:0031213 K11657
gene-evm.TU.Chr13.918 rna-evm.model.Chr13.918 Chr13 26726593 26728218 PREDICTED: importin-4 nan K17604
gene-evm.TU.Chr13.919 rna-evm.model.Chr13.919 Chr13 26731605 26770620 PREDICTED: Major facilitator superfamily domain-containing protein 1 GO:0016020;GO:0055085 K19801

For more detailed data, you can explore the Download section to access the full dataset.