CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.889 rna-evm.model.Chr13.889 Chr13 26151886 26156528 PREDICTED: Replication factor A nan K07466
gene-evm.TU.Chr13.891 rna-evm.model.Chr13.891 Chr13 26178610 26182679 PREDICTED: DNA polymerase III PolC-type nan K02342
gene-evm.TU.Chr13.892 rna-evm.model.Chr13.892 Chr13 26183161 26195195 uncharacterized protein nan K16884
gene-evm.TU.Chr13.893 rna-evm.model.Chr13.893 Chr13 26197194 26202286 PREDICTED: Sodium-dependent glucose transporter 1 GO:0016020;GO:0055085 K08175
gene-evm.TU.Chr13.894 rna-evm.model.Chr13.894 Chr13 26205306 26225303 PREDICTED: DNA polymerase delta subunit 3 GO:0003887;GO:0005634;GO:0006260;GO:0043625 K03504
gene-evm.TU.Chr13.896 rna-evm.model.Chr13.896 Chr13 26225569 26226462 PREDICTED: Putative uncharacterized protein ENSP00000383309 nan K14245
gene-evm.TU.Chr13.899 rna-evm.model.Chr13.899 Chr13 26227783 26228277 PREDICTED: Circumsporozoite protein (Fragment) nan K19454
gene-evm.TU.Chr13.901 rna-evm.model.Chr13.901 Chr13 26234467 26241852 uncharacterized protein nan nan
gene-evm.TU.Chr13.903 rna-evm.model.Chr13.903 Chr13 26251420 26272005 uncharacterized protein GO:0015035 K03673
gene-evm.TU.Chr13.904 rna-evm.model.Chr13.904 Chr13 26276080 26301685 PREDICTED: UV radiation resistance-associated protein nan K21249

For more detailed data, you can explore the Download section to access the full dataset.