CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.875 rna-evm.model.Chr13.875 Chr13 25863905 25887052 PREDICTED: Tyrosyl-DNA phosphodiesterase 1 GO:0005634;GO:0006281;GO:0008081 K10862
gene-evm.TU.Chr13.876 rna-evm.model.Chr13.876 Chr13 25901080 25909127 PREDICTED: Neuronal acetylcholine receptor subunit alpha-5 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr13.877 rna-evm.model.Chr13.877 Chr13 25927143 25933499 PREDICTED: ATP-dependent DNA helicase PIF1 GO:0000723;GO:0003678;GO:0006281 K15255
gene-evm.TU.Chr13.879 rna-evm.model.Chr13.879 Chr13 25951699 25975569 PREDICTED: Neuronal acetylcholine receptor subunit alpha-4 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K05312
gene-evm.TU.Chr13.880 rna-evm.model.Chr13.880 Chr13 25988064 25994813 PREDICTED: Neuronal acetylcholine receptor subunit alpha-7 GO:0004888;GO:0005216;GO:0005230;GO:0006811;GO:0016020;GO:0034220 K04808
gene-evm.TU.Chr13.881 rna-evm.model.Chr13.881 Chr13 26029577 26053699 PREDICTED: mucin-2 GO:0005515 K19894
gene-evm.TU.Chr13.882 rna-evm.model.Chr13.882 Chr13 26055998 26058407 PREDICTED: Tripartite motif-containing protein 2 GO:0008270 K11997
gene-evm.TU.Chr13.883 rna-evm.model.Chr13.883 Chr13 26060909 26062466 uncharacterized protein nan nan
gene-evm.TU.Chr13.884 rna-evm.model.Chr13.884 Chr13 26067543 26096669 PREDICTED: Inactive ubiquitin carboxyl-terminal hydrolase MINDY-4B nan K22647
gene-evm.TU.Chr13.885 rna-evm.model.Chr13.885 Chr13 26103250 26104602 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] nan K12026

For more detailed data, you can explore the Download section to access the full dataset.