CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.862 rna-evm.model.Chr13.862 Chr13 25456067 25460962 PREDICTED: Transforming growth factor-beta-induced protein ig-h3 nan K19519
gene-evm.TU.Chr13.864 rna-evm.model.Chr13.864 Chr13 25519259 25537642 PREDICTED: Phospholipid scramblase 3 GO:0017121;GO:0017128 nan
gene-evm.TU.Chr13.866 rna-evm.model.Chr13.866 Chr13 25551730 25578603 PREDICTED: p21-activated kinase 3 [EC:2.7.11.1] nan K05696
gene-evm.TU.Chr13.867 rna-evm.model.Chr13.867 Chr13 25585279 25640298 PREDICTED: Major facilitator superfamily domain-containing protein 1 GO:0016020;GO:0055085 K19801
gene-evm.TU.Chr13.868 rna-evm.model.Chr13.868 Chr13 25647383 25651849 PREDICTED: Remodeling and spacing factor 1 GO:0006355;GO:0031213 K11657
gene-evm.TU.Chr13.869 rna-evm.model.Chr13.869 Chr13 25690768 25710238 PREDICTED: Allograft inflammatory factor 1 GO:0005509 K18617
gene-evm.TU.Chr13.870 rna-evm.model.Chr13.870 Chr13 25733120 25748208 PREDICTED: histone-lysine N-methyltransferase SETDB2 [EC:2.1.1.43] nan nan
gene-evm.TU.Chr13.871 rna-evm.model.Chr13.871 Chr13 25753969 25790748 PREDICTED: Remodeling and spacing factor 1 GO:0006355;GO:0031213 K11657
gene-evm.TU.Chr13.872 rna-evm.model.Chr13.872 Chr13 25791059 25792279 PREDICTED: regulator of G-protein signaling nan K14725
gene-evm.TU.Chr13.874 rna-evm.model.Chr13.874 Chr13 25847645 25862200 PREDICTED: Dystonin GO:0005515;GO:0005856 K10382

For more detailed data, you can explore the Download section to access the full dataset.