CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.195 rna-evm.model.Chr1.195 Chr1 6066615 6081274 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.1950_evm.TU.Chr1.1952 rna-evm.model.Chr1.1950_evm.model.Chr1.1952 Chr1 62192668 62395561 PREDICTED: Receptor-type tyrosine-protein phosphatase alpha GO:0004725;GO:0006470;GO:0016311;GO:0016791 K06776
gene-evm.TU.Chr1.1953 rna-evm.model.Chr1.1953 Chr1 62401979 62419065 PREDICTED: Transmembrane protein 144 GO:0015144;GO:0016020;GO:0034219 K05340
gene-evm.TU.Chr1.1955 rna-evm.model.Chr1.1955.1 Chr1 62434259 62510374 PREDICTED: CD109 antigen GO:0004866;GO:0005576;GO:0005615 K06530
gene-evm.TU.Chr1.1956 rna-evm.model.Chr1.1956.3 Chr1 62516568 62540898 PREDICTED: Coiled-coil domain-containing protein 169 nan K10352
gene-evm.TU.Chr1.1957 rna-evm.model.Chr1.1957 Chr1 62547297 62551445 PREDICTED: Transforming growth factor-beta-induced protein ig-h3 nan K19519
gene-evm.TU.Chr1.1958 rna-evm.model.Chr1.1958 Chr1 62552386 62559890 PREDICTED: Periostin nan K19519
gene-evm.TU.Chr1.1959 rna-evm.model.Chr1.1959 Chr1 62560186 62568311 PREDICTED: Transforming growth factor-beta-induced protein ig-h3 nan K19519
gene-evm.TU.Chr1.196 rna-evm.model.Chr1.196 Chr1 6085006 6089874 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.1960 rna-evm.model.Chr1.1960 Chr1 62571228 62593542 PREDICTED: Multidrug resistance-associated protein 5 GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05668

For more detailed data, you can explore the Download section to access the full dataset.