CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.850 rna-evm.model.Chr13.850 Chr13 25073166 25077257 PREDICTED: Sarcoplasmic calcium-binding protein nan K12042
gene-evm.TU.Chr13.851 rna-evm.model.Chr13.851 Chr13 25090093 25090983 uncharacterized protein nan nan
gene-evm.TU.Chr13.852 rna-evm.model.Chr13.852 Chr13 25132160 25193434 PREDICTED: Mediator of RNA polymerase II transcription subunit 12-like protein GO:0003712;GO:0006357;GO:0016592 K15162
gene-evm.TU.Chr13.853 rna-evm.model.Chr13.853 Chr13 25193476 25202345 PREDICTED: Zinc finger E-box-binding homeobox 1 GO:0003676 K09299
gene-evm.TU.Chr13.855 rna-evm.model.Chr13.855 Chr13 25218018 25240706 uncharacterized protein nan nan
gene-evm.TU.Chr13.856 rna-evm.model.Chr13.856 Chr13 25241767 25242831 uncharacterized protein nan nan
gene-evm.TU.Chr13.857 rna-evm.model.Chr13.857 Chr13 25251651 25255427 uncharacterized protein nan K13836
gene-evm.TU.Chr13.858 rna-evm.model.Chr13.858 Chr13 25259712 25264405 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222
gene-evm.TU.Chr13.859 rna-evm.model.Chr13.859 Chr13 25375519 25391876 PREDICTED: Protein FAM122A nan nan
gene-evm.TU.Chr13.861 rna-evm.model.Chr13.861 Chr13 25433600 25434883 PREDICTED: Extracellular tyrosine-protein kinase PKDCC GO:0004672;GO:0005524;GO:0006468 K17548

For more detailed data, you can explore the Download section to access the full dataset.