CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.831 rna-evm.model.Chr13.831 Chr13 24771941 24772549 PREDICTED: myotubularin-related protein 10/11/12 nan nan
gene-evm.TU.Chr13.832 rna-evm.model.Chr13.832 Chr13 24772639 24775209 PREDICTED: echinoderm microtubule-associated protein-like 6 nan K21037
gene-evm.TU.Chr13.839 rna-evm.model.Chr13.839 Chr13 24877289 24877906 PREDICTED: histone-lysine N-methyltransferase SETMAR [EC:2.1.1.43] nan K21406
gene-evm.TU.Chr13.842 rna-evm.model.Chr13.842 Chr13 24949113 24970410 PREDICTED: Integral membrane protein 2B nan K18264
gene-evm.TU.Chr13.843 rna-evm.model.Chr13.843 Chr13 24973074 24973940 PREDICTED: protein unc-13 A/B/C nan K19263
gene-evm.TU.Chr13.844 rna-evm.model.Chr13.844 Chr13 24981070 24994509 uncharacterized protein nan K18033
gene-evm.TU.Chr13.846 rna-evm.model.Chr13.846 Chr13 25010241 25016790 PREDICTED: Sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1 nan K24469
gene-evm.TU.Chr13.847 rna-evm.model.Chr13.847 Chr13 25025909 25033831 PREDICTED: mucin-2 GO:0005576;GO:0006030;GO:0008061 K06459
gene-evm.TU.Chr13.848 rna-evm.model.Chr13.848 Chr13 25056099 25058039 PREDICTED: Sarcoplasmic calcium-binding protein nan K12042
gene-evm.TU.Chr13.849 rna-evm.model.Chr13.849 Chr13 25062859 25065680 PREDICTED: Sarcoplasmic calcium-binding protein GO:0005509 K23901

For more detailed data, you can explore the Download section to access the full dataset.