CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.812 rna-evm.model.Chr13.812 Chr13 24011415 24011931 PREDICTED: E3 SUMO-protein ligase KIAA1586-like nan K24642
gene-evm.TU.Chr13.813 rna-evm.model.Chr13.813 Chr13 24046335 24049145 uncharacterized protein nan nan
gene-evm.TU.Chr13.814 rna-evm.model.Chr13.814 Chr13 24090498 24093032 uncharacterized protein nan nan
gene-evm.TU.Chr13.816 rna-evm.model.Chr13.816 Chr13 24174531 24195597 PREDICTED: GTPase-activating protein skywalker nan K21841
gene-evm.TU.Chr13.817 rna-evm.model.Chr13.817 Chr13 24210195 24220372 PREDICTED: Zinc finger protein 347 GO:0003676 K09191
gene-evm.TU.Chr13.818 rna-evm.model.Chr13.818 Chr13 24269285 24293604 PREDICTED: Tumor necrosis factor receptor superfamily member 6 GO:0005515 K05143
gene-evm.TU.Chr13.82 rna-evm.model.Chr13.82 Chr13 2573650 2574072 PREDICTED: tripartite motif-containing protein 2/3 nan K26041
gene-evm.TU.Chr13.824 rna-evm.model.Chr13.824 Chr13 24498382 24500883 PREDICTED: Alpha-N-acetylgalactosamine-specific lectin nan K06468
gene-evm.TU.Chr13.828 rna-evm.model.Chr13.828 Chr13 24541252 24590856 PREDICTED: Hemicentin-1 nan K04596
gene-evm.TU.Chr13.829 rna-evm.model.Chr13.829 Chr13 24691319 24706369 PREDICTED: Hemicentin-1 GO:0005515 K16857

For more detailed data, you can explore the Download section to access the full dataset.