CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.796 rna-evm.model.Chr13.796 Chr13 23544236 23544885 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr13.797 rna-evm.model.Chr13.797 Chr13 23546882 23561332 uncharacterized protein nan K26398
gene-evm.TU.Chr13.798 rna-evm.model.Chr13.798 Chr13 23567592 23575210 PREDICTED: Wnt inhibitory factor 1 nan K24465
gene-evm.TU.Chr13.801 rna-evm.model.Chr13.801 Chr13 23652803 23668362 PREDICTED: Low-density lipoprotein receptor-related protein 2 GO:0005515 K20674
gene-evm.TU.Chr13.803 rna-evm.model.Chr13.803 Chr13 23671034 23673849 PREDICTED: Eukaryotic translation initiation factor 2-alpha kinase 3 GO:0004672;GO:0005524;GO:0006468 K08860
gene-evm.TU.Chr13.804 rna-evm.model.Chr13.804 Chr13 23732421 23733269 PREDICTED: protocadherin-15 nan K13192
gene-evm.TU.Chr13.805 rna-evm.model.Chr13.805 Chr13 23733912 23735546 PREDICTED: myotubularin-related protein 10/11/12 nan K04763
gene-evm.TU.Chr13.806 rna-evm.model.Chr13.806 Chr13 23736032 23737714 PREDICTED: ESCRT-I complex subunit TSG101 nan K10804
gene-evm.TU.Chr13.809 rna-evm.model.Chr13.809 Chr13 23862284 23869988 PREDICTED: Delta and Notch-like epidermal growth factor-related receptor GO:0005509 K06839
gene-evm.TU.Chr13.810 rna-evm.model.Chr13.810 Chr13 23959536 23963531 PREDICTED: 52 kDa repressor of the inhibitor of the protein kinase GO:0046983 K24674

For more detailed data, you can explore the Download section to access the full dataset.