CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.783 rna-evm.model.Chr13.783 Chr13 22526200 22591028 PREDICTED: Adhesion G protein-coupled receptor B1 nan K04596
gene-evm.TU.Chr13.784 rna-evm.model.Chr13.784 Chr13 22633379 22646656 PREDICTED: Cytochrome P450 1A1 GO:0005506;GO:0016705;GO:0020037;GO:0055114 K07408
gene-evm.TU.Chr13.786 rna-evm.model.Chr13.786 Chr13 22734032 22752540 PREDICTED: Orexin receptor type 2 GO:0004930;GO:0007186;GO:0007631;GO:0016020;GO:0016499 K04239
gene-evm.TU.Chr13.787 rna-evm.model.Chr13.787 Chr13 22817160 22820284 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan K24586
gene-evm.TU.Chr13.788 rna-evm.model.Chr13.788 Chr13 22842484 22844101 PREDICTED: apoptosis-resistant E3 ubiquitin protein ligase 1 [EC:2.3.2.26] GO:0004842 K22371
gene-evm.TU.Chr13.789 rna-evm.model.Chr13.789 Chr13 22848932 22852151 PREDICTED: solute carrier family 15, member 5 GO:0015074 K07497
gene-evm.TU.Chr13.79 rna-evm.model.Chr13.79 Chr13 2366389 2368341 PREDICTED: squid nan nan
gene-evm.TU.Chr13.793 rna-evm.model.Chr13.793 Chr13 23467445 23481068 PREDICTED: Glutamate receptor 1 GO:0004970;GO:0005216;GO:0006811;GO:0016020;GO:0038023 K05198
gene-evm.TU.Chr13.794 rna-evm.model.Chr13.794 Chr13 23487027 23502511 PREDICTED: Reticulocyte-binding protein 2 homolog a nan K12822
gene-evm.TU.Chr13.795 rna-evm.model.Chr13.795 Chr13 23515580 23543337 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.