CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.771 rna-evm.model.Chr13.771 Chr13 21857812 21874346 PREDICTED: PCI domain-containing protein 2 nan K23801
gene-evm.TU.Chr13.772 rna-evm.model.Chr13.772 Chr13 21908722 21917244 PREDICTED: Galactose-3-O-sulfotransferase 3 GO:0001733;GO:0005794;GO:0009247;GO:0016020 K09676
gene-evm.TU.Chr13.773 rna-evm.model.Chr13.773 Chr13 21922058 21947059 PREDICTED: Importin-5 GO:0006606 K20222
gene-evm.TU.Chr13.774 rna-evm.model.Chr13.774 Chr13 21948344 22000378 PREDICTED: cAMP-dependent protein kinase catalytic subunit PRKX GO:0004672;GO:0004674;GO:0005524;GO:0006468 K19584
gene-evm.TU.Chr13.775 rna-evm.model.Chr13.775 Chr13 22018994 22040765 PREDICTED: Neurogenic locus Notch protein GO:0005509 K02599
gene-evm.TU.Chr13.776 rna-evm.model.Chr13.776 Chr13 22052109 22093787 PREDICTED: Tyrosine-protein kinase Fyn GO:0004672;GO:0005524;GO:0006468 K05703
gene-evm.TU.Chr13.778 rna-evm.model.Chr13.778 Chr13 22365267 22393576 PREDICTED: Reticulocyte-binding protein 2 homolog a nan K03646
gene-evm.TU.Chr13.78 rna-evm.model.Chr13.78 Chr13 2345715 2348330 PREDICTED: Carbohydrate sulfotransferase 11 GO:0008146;GO:0016020;GO:0016051 K01017
gene-evm.TU.Chr13.780 rna-evm.model.Chr13.780 Chr13 22448458 22455999 PREDICTED: Adhesion G protein-coupled receptor B1 nan K24436
gene-evm.TU.Chr13.781 rna-evm.model.Chr13.781 Chr13 22465527 22485850 PREDICTED: Hemicentin-1 nan K24436

For more detailed data, you can explore the Download section to access the full dataset.