CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.76 rna-evm.model.Chr13.76 Chr13 2296102 2300046 PREDICTED: glutamate receptor, ionotropic kainate 4 nan nan
gene-evm.TU.Chr13.760 rna-evm.model.Chr13.760 Chr13 21687702 21688409 PREDICTED: Leucine-rich repeat and coiled-coil domain-containing protein PF07_0014 nan K23478
gene-evm.TU.Chr13.761 rna-evm.model.Chr13.761 Chr13 21690272 21715737 uncharacterized protein nan K14317
gene-evm.TU.Chr13.762_evm.TU.Chr13.763 rna-evm.model.Chr13.762_evm.model.Chr13.763 Chr13 21717657 21750237 PREDICTED: Sulfotransferase 1C4 GO:0008146 K01025
gene-evm.TU.Chr13.764 rna-evm.model.Chr13.764 Chr13 21768219 21773682 PREDICTED: Sulfotransferase 1C4 GO:0008146 K01025
gene-evm.TU.Chr13.765 rna-evm.model.Chr13.765 Chr13 21776569 21799121 PREDICTED: Zinc finger CCCH domain-containing protein 13 GO:0036396;GO:0046872;GO:0080009 K13056
gene-evm.TU.Chr13.766 rna-evm.model.Chr13.766 Chr13 21803200 21827063 PREDICTED: Baculoviral IAP repeat-containing protein 3 nan K16060
gene-evm.TU.Chr13.769 rna-evm.model.Chr13.769 Chr13 21836115 21838055 uncharacterized protein nan K19353
gene-evm.TU.Chr13.77 rna-evm.model.Chr13.77 Chr13 2315121 2316648 PREDICTED: UDP-D-xylose:L-fucose alpha-1,3-D-xylosyltransferase 3 nan K11714
gene-evm.TU.Chr13.770 rna-evm.model.Chr13.770 Chr13 21846032 21851679 uncharacterized protein nan K19171

For more detailed data, you can explore the Download section to access the full dataset.