CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.748 rna-evm.model.Chr13.748 Chr13 21381900 21388192 PREDICTED: CBL-interacting protein kinase 26 GO:0004672;GO:0005524;GO:0006468 K08286
gene-evm.TU.Chr13.749 rna-evm.model.Chr13.749 Chr13 21390710 21395742 PREDICTED: GPALPP motifs-containing protein 1 nan K10750
gene-evm.TU.Chr13.75 rna-evm.model.Chr13.75 Chr13 2228125 2246791 uncharacterized protein nan K11446
gene-evm.TU.Chr13.750 rna-evm.model.Chr13.750 Chr13 21397936 21401063 PREDICTED: Peptidyl-prolyl cis-trans isomerase NIMA-interacting 4 GO:0003755 K09579
gene-evm.TU.Chr13.751 rna-evm.model.Chr13.751 Chr13 21404856 21414042 PREDICTED: FUN14 domain-containing protein 1 nan K17986
gene-evm.TU.Chr13.752 rna-evm.model.Chr13.752 Chr13 21439215 21515796 PREDICTED: Neurogenic locus notch homolog protein 1 GO:0005509 K02599
gene-evm.TU.Chr13.754 rna-evm.model.Chr13.754 Chr13 21529611 21530616 uncharacterized protein nan K15569
gene-evm.TU.Chr13.757 rna-evm.model.Chr13.757 Chr13 21611249 21614615 uncharacterized protein nan K14713
gene-evm.TU.Chr13.758 rna-evm.model.Chr13.758 Chr13 21601640 21643401 uncharacterized protein nan K21458
gene-evm.TU.Chr13.759 rna-evm.model.Chr13.759 Chr13 21666603 21683703 PREDICTED: Insoluble matrix shell protein 1 (Fragment) nan nan

For more detailed data, you can explore the Download section to access the full dataset.