CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.733 rna-evm.model.Chr13.733 Chr13 21007576 21008811 PREDICTED: Rho guanine nucleotide exchange factor 7 nan K12331
gene-evm.TU.Chr13.734 rna-evm.model.Chr13.734 Chr13 21029139 21034095 uncharacterized protein nan K16916
gene-evm.TU.Chr13.737 rna-evm.model.Chr13.737 Chr13 21043105 21055724 uncharacterized protein nan nan
gene-evm.TU.Chr13.738 rna-evm.model.Chr13.738 Chr13 21082480 21110413 PREDICTED: Retinoblastoma-associated protein GO:0005634;GO:0006357;GO:0006915;GO:0008134;GO:0008285;GO:0035189;GO:0045892;GO:0051726;GO:2000134 K06618
gene-evm.TU.Chr13.739 rna-evm.model.Chr13.739 Chr13 21112566 21112859 PREDICTED: Transposable element Tc3 transposase nan nan
gene-evm.TU.Chr13.74 rna-evm.model.Chr13.74 Chr13 2214556 2227407 PREDICTED: G2/M phase-specific E3 ubiquitin-protein ligase GO:0004842 K22371
gene-evm.TU.Chr13.740 rna-evm.model.Chr13.740 Chr13 21117355 21177228 PREDICTED: Lysine-specific demethylase 6A GO:0005515 K11447
gene-evm.TU.Chr13.743 rna-evm.model.Chr13.743 Chr13 21250004 21250553 PREDICTED: phosphatidylinositol-4-phosphate 3-kinase [EC:2.7.1.154] nan K24295
gene-evm.TU.Chr13.744 rna-evm.model.Chr13.744.1 Chr13 21291355 21294539 PREDICTED: Transcription factor SOX-2 GO:0003677;GO:0005634;GO:0006355 K16796
gene-evm.TU.Chr13.747 rna-evm.model.Chr13.747 Chr13 21374803 21381581 PREDICTED: Leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1 GO:0005515 K23533

For more detailed data, you can explore the Download section to access the full dataset.