CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.723 rna-evm.model.Chr13.723 Chr13 20766045 20786717 PREDICTED: Pantetheinase GO:0006807 K08069
gene-evm.TU.Chr13.724 rna-evm.model.Chr13.724 Chr13 20866949 20868363 PREDICTED: Omega-3 fatty acid desaturase, endoplasmic reticulum GO:0006629 K10257
gene-evm.TU.Chr13.725 rna-evm.model.Chr13.725 Chr13 20873668 20876293 uncharacterized protein nan K20481
gene-evm.TU.Chr13.726 rna-evm.model.Chr13.726 Chr13 20883468 20896346 uncharacterized protein nan K24057
gene-evm.TU.Chr13.727 rna-evm.model.Chr13.727 Chr13 20898238 20906318 uncharacterized protein nan K14325
gene-evm.TU.Chr13.728 rna-evm.model.Chr13.728 Chr13 20924344 20932389 PREDICTED: calpain-5 [EC:3.4.22.-] nan K02195
gene-evm.TU.Chr13.729 rna-evm.model.Chr13.729 Chr13 20954339 20964450 PREDICTED: Zinc finger protein 13 GO:0003676 K09191
gene-evm.TU.Chr13.73 rna-evm.model.Chr13.73 Chr13 2206236 2212614 PREDICTED: solute carrier family 15, member 5 GO:0015074 K07497
gene-evm.TU.Chr13.730 rna-evm.model.Chr13.730 Chr13 20991846 20995144 PREDICTED: DNA-directed RNA polymerase II subunit RPB1 [EC:2.7.7.6] nan K20266
gene-evm.TU.Chr13.732 rna-evm.model.Chr13.732 Chr13 21000471 21005662 uncharacterized protein nan K07297

For more detailed data, you can explore the Download section to access the full dataset.