CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.194 rna-evm.model.Chr1.194 Chr1 6060973 6063908 PREDICTED: Putative nuclease HARBI1 nan K23222
gene-evm.TU.Chr1.1940 rna-evm.model.Chr1.1940 Chr1 61743458 61746658 PREDICTED: Protein adenylyltransferase SelO nan K08997
gene-evm.TU.Chr1.1941 rna-evm.model.Chr1.1941 Chr1 61757062 61766020 PREDICTED: High mobility group protein DSP1 nan K10802
gene-evm.TU.Chr1.1942 rna-evm.model.Chr1.1942 Chr1 61770765 61773191 PREDICTED: Beta-1,3-galactosyltransferase 5 GO:0006486;GO:0008378;GO:0016020 K07819
gene-evm.TU.Chr1.1943 rna-evm.model.Chr1.1943 Chr1 61794546 61800441 PREDICTED: Acid-sensing ion channel 1A GO:0005272;GO:0006814;GO:0016020 K04828
gene-evm.TU.Chr1.1944 rna-evm.model.Chr1.1944 Chr1 61829312 61876189 PREDICTED: Transcription initiation factor TFIID subunit 1 GO:0005515 K03125
gene-evm.TU.Chr1.1945 rna-evm.model.Chr1.1945 Chr1 61940649 61959003 PREDICTED: Delta-like protein D GO:0005509;GO:0007154;GO:0007219;GO:0007275;GO:0016020;GO:0016020 K06052
gene-evm.TU.Chr1.1947 rna-evm.model.Chr1.1947 Chr1 62079693 62083663 PREDICTED: Transforming growth factor-beta-induced protein ig-h3 nan K19519
gene-evm.TU.Chr1.1948 rna-evm.model.Chr1.1948 Chr1 62157234 62177767 PREDICTED: Receptor-type tyrosine-protein phosphatase C GO:0004725;GO:0006470;GO:0016311;GO:0016791 K13297
gene-evm.TU.Chr1.1949 rna-evm.model.Chr1.1949 Chr1 62187860 62188621 PREDICTED: coatomer subunit beta' nan K06267

For more detailed data, you can explore the Download section to access the full dataset.