CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.712 rna-evm.model.Chr13.712 Chr13 20537281 20542968 PREDICTED: Tumor necrosis factor receptor superfamily member 6 GO:0004888;GO:0005515;GO:0006915;GO:0006955;GO:0007165;GO:0016020 K02583
gene-evm.TU.Chr13.713 rna-evm.model.Chr13.713 Chr13 20543661 20546692 uncharacterized protein nan nan
gene-evm.TU.Chr13.714 rna-evm.model.Chr13.714 Chr13 20556918 20601446 PREDICTED: Sodium/hydrogen exchanger 2 GO:0006812;GO:0006814;GO:0006885;GO:0015299;GO:0015385;GO:0016020;GO:0055085 K14722
gene-evm.TU.Chr13.717 rna-evm.model.Chr13.717 Chr13 20659546 20667236 PREDICTED: Zinc finger HIT domain-containing protein 1 GO:0006338;GO:0043486 K11663
gene-evm.TU.Chr13.718 rna-evm.model.Chr13.718 Chr13 20675153 20680313 uncharacterized protein nan nan
gene-evm.TU.Chr13.719 rna-evm.model.Chr13.719 Chr13 20685904 20686350 uncharacterized protein nan K15148
gene-evm.TU.Chr13.72 rna-evm.model.Chr13.72 Chr13 2187152 2187817 uncharacterized protein nan nan
gene-evm.TU.Chr13.720 rna-evm.model.Chr13.720 Chr13 20688631 20702962 uncharacterized protein nan nan
gene-evm.TU.Chr13.721 rna-evm.model.Chr13.721 Chr13 20708826 20723606 PREDICTED: calpain-5 [EC:3.4.22.-] nan K25789
gene-evm.TU.Chr13.722 rna-evm.model.Chr13.722 Chr13 20729082 20741440 PREDICTED: nuclease HARBI1 [EC:3.1.-.-] nan K23222

For more detailed data, you can explore the Download section to access the full dataset.