CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.689 rna-evm.model.Chr13.689 Chr13 20027123 20028560 PREDICTED: protocadherin-15 GO:0046872 K17552
gene-evm.TU.Chr13.69 rna-evm.model.Chr13.69 Chr13 2092018 2098309 PREDICTED: Epithelial discoidin domain-containing receptor 1 GO:0004672;GO:0004713;GO:0005524;GO:0006468 K05125
gene-evm.TU.Chr13.690 rna-evm.model.Chr13.690 Chr13 20028875 20029789 PREDICTED: myotubularin-related protein 10/11/12 nan K00986
gene-evm.TU.Chr13.691 rna-evm.model.Chr13.691 Chr13 20029805 20033061 PREDICTED: vomeronasal 2 receptor GO:0003677;GO:0006310;GO:0015074 K04763
gene-evm.TU.Chr13.693 rna-evm.model.Chr13.693 Chr13 20057097 20057594 PREDICTED: deleted in malignant brain tumors 1 protein nan nan
gene-evm.TU.Chr13.694 rna-evm.model.Chr13.694 Chr13 20077946 20083266 uncharacterized protein nan K05160
gene-evm.TU.Chr13.695 rna-evm.model.Chr13.695 Chr13 20086246 20086662 PREDICTED: Tumor necrosis factor receptor superfamily member 23 GO:0005515 K05157
gene-evm.TU.Chr13.696 rna-evm.model.Chr13.696 Chr13 20094012 20094425 PREDICTED: calcium permeable stress-gated cation channel nan K07499
gene-evm.TU.Chr13.697 rna-evm.model.Chr13.697 Chr13 20121692 20122091 PREDICTED: Tumor necrosis factor receptor superfamily member 6 GO:0004888;GO:0005515;GO:0006915;GO:0006955;GO:0007165;GO:0016020 K05143
gene-evm.TU.Chr13.699 rna-evm.model.Chr13.699 Chr13 20202057 20240655 PREDICTED: Death-associated inhibitor of apoptosis 2 nan K16060

For more detailed data, you can explore the Download section to access the full dataset.