CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.671 rna-evm.model.Chr13.671 Chr13 19552449 19555801 PREDICTED: dedicator of cytokinesis protein 1 nan nan
gene-evm.TU.Chr13.672 rna-evm.model.Chr13.672 Chr13 19556269 19580437 PREDICTED: Ras-related C3 botulinum toxin substrate 2 GO:0003924;GO:0005525;GO:0007264 K07861
gene-evm.TU.Chr13.673 rna-evm.model.Chr13.673 Chr13 19574566 19575928 PREDICTED: tudor domain-containing protein 1/4/6/7 nan K04464
gene-evm.TU.Chr13.674 rna-evm.model.Chr13.674 Chr13 19576016 19578436 PREDICTED: NLR family CARD domain-containing protein 3 nan nan
gene-evm.TU.Chr13.677_evm.TU.Chr13.683 rna-evm.model.Chr13.677_evm.model.Chr13.683 Chr13 19715659 19852234 PREDICTED: Galectin-5 GO:0030246 K06832
gene-evm.TU.Chr13.680 rna-evm.model.Chr13.680 Chr13 19729489 19730644 uncharacterized protein nan nan
gene-evm.TU.Chr13.681 rna-evm.model.Chr13.681 Chr13 19754182 19767191 uncharacterized protein nan nan
gene-evm.TU.Chr13.682 rna-evm.model.Chr13.682 Chr13 19776973 19796677 PREDICTED: Probable serine/threonine-protein kinase roco5 GO:0005515;GO:0007165 K08844
gene-evm.TU.Chr13.684 rna-evm.model.Chr13.684 Chr13 19885770 19895631 uncharacterized protein nan K17592
gene-evm.TU.Chr13.685 rna-evm.model.Chr13.685 Chr13 19928257 19930348 PREDICTED: nuclear apoptosis-inducing factor 1 GO:0005634;GO:0006915 K23221

For more detailed data, you can explore the Download section to access the full dataset.