CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.656 rna-evm.model.Chr13.656 Chr13 18856426 18890336 PREDICTED: Putative glycerol kinase 5 GO:0005975;GO:0016773 K19583
gene-evm.TU.Chr13.658_evm.TU.Chr13.657 rna-evm.model.Chr13.658_evm.model.Chr13.657 Chr13 18895048 19035046 PREDICTED: Disks large homolog 1 GO:0005515 K12076
gene-evm.TU.Chr13.659 rna-evm.model.Chr13.659 Chr13 19044285 19052083 PREDICTED: DNA excision repair protein ERCC-8 GO:0005515;GO:0006283 K10570
gene-evm.TU.Chr13.662 rna-evm.model.Chr13.662 Chr13 19105851 19109627 uncharacterized protein nan K21016
gene-evm.TU.Chr13.664 rna-evm.model.Chr13.664 Chr13 19130861 19136068 PREDICTED: Pantetheinase GO:0006807 K08069
gene-evm.TU.Chr13.665 rna-evm.model.Chr13.665 Chr13 19142988 19145073 uncharacterized protein nan nan
gene-evm.TU.Chr13.666 rna-evm.model.Chr13.666 Chr13 19156689 19196027 PREDICTED: AP-1 complex subunit sigma-2 GO:0015031 K12394
gene-evm.TU.Chr13.667 rna-evm.model.Chr13.667 Chr13 19275052 19280565 PREDICTED: Glycoprotein 3-alpha-L-fucosyltransferase A GO:0006486;GO:0008417;GO:0016020 K00753
gene-evm.TU.Chr13.669 rna-evm.model.Chr13.669 Chr13 19339252 19349978 PREDICTED: Glycoprotein 3-alpha-L-fucosyltransferase A GO:0006486;GO:0008417;GO:0016020 K00753
gene-evm.TU.Chr13.670 rna-evm.model.Chr13.670 Chr13 19518609 19544776 PREDICTED: Tripeptidyl-peptidase 2 GO:0004252;GO:0006508 K01280

For more detailed data, you can explore the Download section to access the full dataset.