CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.644 rna-evm.model.Chr13.644.2 Chr13 18413376 18496031 PREDICTED: Tyrosine-protein kinase RYK GO:0004672;GO:0005524;GO:0006468 K05128
gene-evm.TU.Chr13.645 rna-evm.model.Chr13.645 Chr13 18497891 18521130 PREDICTED: Splicing factor 3A subunit 1 GO:0003723;GO:0005515;GO:0006396 K12825
gene-evm.TU.Chr13.646 rna-evm.model.Chr13.646 Chr13 18541255 18592439 PREDICTED: mucin-2 nan K25993
gene-evm.TU.Chr13.647 rna-evm.model.Chr13.647 Chr13 18596257 18603289 uncharacterized protein nan K22018
gene-evm.TU.Chr13.649 rna-evm.model.Chr13.649 Chr13 18626443 18671755 PREDICTED: Multidrug resistance-associated protein 5 GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05668
gene-evm.TU.Chr13.650 rna-evm.model.Chr13.650 Chr13 18686500 18746824 PREDICTED: Multidrug resistance-associated protein 5 GO:0005524;GO:0016020;GO:0016887;GO:0042626;GO:0055085 K05668
gene-evm.TU.Chr13.651 rna-evm.model.Chr13.651 Chr13 18749055 18755060 PREDICTED: Sterile alpha motif domain-containing protein 9-like nan K23949
gene-evm.TU.Chr13.652 rna-evm.model.Chr13.652 Chr13 18759552 18786694 PREDICTED: Ankyrin-1 GO:0005515 K15503
gene-evm.TU.Chr13.654 rna-evm.model.Chr13.654 Chr13 18791829 18797413 PREDICTED: Methylosome subunit pICln GO:0000387;GO:0005829;GO:0005886;GO:0006821;GO:0006884;GO:0034709;GO:0034715 K05019
gene-evm.TU.Chr13.655 rna-evm.model.Chr13.655 Chr13 18801455 18836899 PREDICTED: Transmembrane protein 164 nan K23733

For more detailed data, you can explore the Download section to access the full dataset.