CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.625 rna-evm.model.Chr13.625 Chr13 17928551 17937646 PREDICTED: 52 kDa repressor of the inhibitor of the protein kinase nan K24674
gene-evm.TU.Chr13.626 rna-evm.model.Chr13.626 Chr13 17937710 17958108 PREDICTED: membrane dipeptidase [EC:3.4.13.19] nan K26653
gene-evm.TU.Chr13.627 rna-evm.model.Chr13.627 Chr13 18111517 18117135 PREDICTED: Inactive pancreatic lipase-related protein 1 GO:0004806;GO:0006629;GO:0052689 K14073
gene-evm.TU.Chr13.628 rna-evm.model.Chr13.628 Chr13 18124480 18131068 PREDICTED: Carbohydrate sulfotransferase 15 nan K08106
gene-evm.TU.Chr13.629 rna-evm.model.Chr13.629 Chr13 18134274 18161924 PREDICTED: Filamin-B GO:0005515 K04437
gene-evm.TU.Chr13.63 rna-evm.model.Chr13.63 Chr13 1902009 1911357 uncharacterized protein nan K10396
gene-evm.TU.Chr13.630 rna-evm.model.Chr13.630 Chr13 18163687 18172384 uncharacterized protein nan nan
gene-evm.TU.Chr13.631 rna-evm.model.Chr13.631 Chr13 18214782 18217802 PREDICTED: Bombesin receptor subtype-3 GO:0004930;GO:0007186;GO:0016020 K04146
gene-evm.TU.Chr13.632 rna-evm.model.Chr13.632 Chr13 18224866 18245810 PREDICTED: Protein mono-ADP-ribosyltransferase PARP12 GO:0046872 K15259
gene-evm.TU.Chr13.633 rna-evm.model.Chr13.633 Chr13 18241417 18245334 PREDICTED: Zinc finger protein 862 nan K24642

For more detailed data, you can explore the Download section to access the full dataset.