CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.613 rna-evm.model.Chr13.613 Chr13 17305186 17324856 uncharacterized protein nan K10624
gene-evm.TU.Chr13.614 rna-evm.model.Chr13.614 Chr13 17328073 17457530 PREDICTED: Inositol 1,4,5-trisphosphate receptor type 1 GO:0005216;GO:0005220;GO:0005262;GO:0005783;GO:0006811;GO:0006816;GO:0016020;GO:0055085;GO:0070588;GO:0070679 K04960
gene-evm.TU.Chr13.615 rna-evm.model.Chr13.615 Chr13 17470973 17509298 PREDICTED: Inositol 1,4,5-trisphosphate receptor type 1 GO:0005220;GO:0005262;GO:0005783;GO:0006816;GO:0016020;GO:0070588;GO:0070679 K04960
gene-evm.TU.Chr13.616 rna-evm.model.Chr13.616 Chr13 17509472 17525238 PREDICTED: Inositol 1,4,5-trisphosphate receptor type 1 GO:0005216;GO:0006811;GO:0016020;GO:0055085 K04960
gene-evm.TU.Chr13.618 rna-evm.model.Chr13.618 Chr13 17533537 17540761 PREDICTED: Mannose-6-phosphate isomerase GO:0004476;GO:0005975;GO:0008270;GO:0009298 K01809
gene-evm.TU.Chr13.619 rna-evm.model.Chr13.619 Chr13 17540954 17552733 PREDICTED: Ecto-NOX disulfide-thiol exchanger 1 GO:0003676;GO:0007624;GO:0009897;GO:0016491 K24982
gene-evm.TU.Chr13.620 rna-evm.model.Chr13.620 Chr13 17567722 17574737 PREDICTED: Cell division cycle protein 20 homolog GO:0005515;GO:0010997;GO:0097027;GO:1904668 K03363
gene-evm.TU.Chr13.621 rna-evm.model.Chr13.621 Chr13 17772699 17773002 PREDICTED: CD109 antigen nan nan
gene-evm.TU.Chr13.622 rna-evm.model.Chr13.622 Chr13 17810729 17811629 uncharacterized protein nan nan
gene-evm.TU.Chr13.624 rna-evm.model.Chr13.624 Chr13 17856959 17871680 PREDICTED: LINE-1 retrotransposable element ORF2 protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.