CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.601 rna-evm.model.Chr13.601 Chr13 16949720 16960942 PREDICTED: Transcription initiation factor TFIID subunit 6 GO:0000124;GO:0005669;GO:0006352;GO:0006357;GO:0006367;GO:0046695 K03131
gene-evm.TU.Chr13.603 rna-evm.model.Chr13.603 Chr13 16974269 16977276 PREDICTED: Centrosomal protein of 19 kDa nan K16801
gene-evm.TU.Chr13.604 rna-evm.model.Chr13.604 Chr13 16981795 16993015 PREDICTED: Ubiquitin-like-conjugating enzyme ATG3 nan K08343
gene-evm.TU.Chr13.605 rna-evm.model.Chr13.605 Chr13 16993114 16994899 PREDICTED: Ankyrin repeat domain-containing protein 39 GO:0005515 K06694
gene-evm.TU.Chr13.606 rna-evm.model.Chr13.606 Chr13 16998153 17026170 PREDICTED: Gamma-tubulin complex component 3 GO:0000226;GO:0000922;GO:0005815;GO:0007020;GO:0043015 K16570
gene-evm.TU.Chr13.608 rna-evm.model.Chr13.608 Chr13 17060767 17096001 uncharacterized protein GO:0005576;GO:0006030;GO:0008061 nan
gene-evm.TU.Chr13.609 rna-evm.model.Chr13.609 Chr13 17099220 17118654 PREDICTED: Filamentous hemagglutinin nan K10955
gene-evm.TU.Chr13.61 rna-evm.model.Chr13.61 Chr13 1840126 1840860 PREDICTED: Uncharacterized protein R354 nan K21233
gene-evm.TU.Chr13.610 rna-evm.model.Chr13.610 Chr13 17121616 17153172 PREDICTED: CRE-CLEC-199 protein nan K24236
gene-evm.TU.Chr13.611_evm.TU.Chr13.612 rna-evm.model.Chr13.611_evm.model.Chr13.612 Chr13 17202484 17302863 PREDICTED: von Willebrand factor D and EGF domain-containing protein nan K06252

For more detailed data, you can explore the Download section to access the full dataset.