CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1926 rna-evm.model.Chr1.1926 Chr1 61341713 61364248 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K22804
gene-evm.TU.Chr1.1927 rna-evm.model.Chr1.1927 Chr1 61384959 61388571 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.1928 rna-evm.model.Chr1.1928 Chr1 61396335 61396925 PREDICTED: Heat shock 70 kDa protein 12A nan K04044
gene-evm.TU.Chr1.1929 rna-evm.model.Chr1.1929 Chr1 61415398 61435359 PREDICTED: Obscurin nan K12567
gene-evm.TU.Chr1.1930 rna-evm.model.Chr1.1930 Chr1 61445834 61465823 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.1931 rna-evm.model.Chr1.1931 Chr1 61476450 61476845 PREDICTED: CD109 antigen nan nan
gene-evm.TU.Chr1.1935 rna-evm.model.Chr1.1935 Chr1 61596958 61599071 PREDICTED: Collagen-like protein 1 nan K13884
gene-evm.TU.Chr1.1937 rna-evm.model.Chr1.1937 Chr1 61616657 61627548 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.1938 rna-evm.model.Chr1.1938 Chr1 61637789 61718729 PREDICTED: Nuclear factor related to kappa-B-binding protein GO:0031011 K11671
gene-evm.TU.Chr1.1939 rna-evm.model.Chr1.1939 Chr1 61720263 61741082 PREDICTED: Eukaryotic translation initiation factor 3 subunit F GO:0003743;GO:0005515;GO:0005852;GO:0006413;GO:0031369 K03249

For more detailed data, you can explore the Download section to access the full dataset.