CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.590 rna-evm.model.Chr13.590 Chr13 16762439 16763041 PREDICTED: Pogo transposable element with KRAB domain nan K11496
gene-evm.TU.Chr13.591 rna-evm.model.Chr13.591 Chr13 16763340 16765673 PREDICTED: Pogo transposable element with KRAB domain nan K07483
gene-evm.TU.Chr13.592 rna-evm.model.Chr13.592 Chr13 16774128 16784426 PREDICTED: Protein CWC15 homolog A GO:0000398;GO:0005681 K12863
gene-evm.TU.Chr13.593 rna-evm.model.Chr13.593 Chr13 16790869 16795403 PREDICTED: AMME syndrome candidate gene 1 protein homolog nan K24611
gene-evm.TU.Chr13.594 rna-evm.model.Chr13.594 Chr13 16809663 16819211 PREDICTED: Monocarboxylate transporter 13 GO:0016020;GO:0055085 K08190
gene-evm.TU.Chr13.596 rna-evm.model.Chr13.596 Chr13 16860031 16864725 uncharacterized protein nan K20188
gene-evm.TU.Chr13.598 rna-evm.model.Chr13.598 Chr13 16881149 16916842 PREDICTED: F-box-like/WD repeat-containing protein TBL1XR1 GO:0005515 K04508
gene-evm.TU.Chr13.599 rna-evm.model.Chr13.599 Chr13 16929403 16939615 PREDICTED: Arginine and glutamate-rich protein 1 nan K13173
gene-evm.TU.Chr13.60 rna-evm.model.Chr13.60 Chr13 1839615 1840004 PREDICTED: Inhibitor of growth protein 4 nan K11396
gene-evm.TU.Chr13.600 rna-evm.model.Chr13.600 Chr13 16942851 16949556 PREDICTED: Dynactin subunit 1 nan K04648

For more detailed data, you can explore the Download section to access the full dataset.