CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.569 rna-evm.model.Chr13.569 Chr13 16147709 16159215 PREDICTED: Protein-glutamine gamma-glutamyltransferase K GO:0003810;GO:0018149 K05619
gene-evm.TU.Chr13.570 rna-evm.model.Chr13.570 Chr13 16163451 16172927 PREDICTED: Hemocyte protein-glutamine gamma-glutamyltransferase GO:0003810;GO:0018149 K05619
gene-evm.TU.Chr13.571 rna-evm.model.Chr13.571.1 Chr13 16175583 16201731 uncharacterized protein GO:0005515 K25450
gene-evm.TU.Chr13.572 rna-evm.model.Chr13.572 Chr13 16209325 16221612 PREDICTED: Alpha-1,2-mannosyltransferase ALG9 GO:0000030;GO:0016757 K03846
gene-evm.TU.Chr13.573 rna-evm.model.Chr13.573 Chr13 16221799 16248500 PREDICTED: Propionyl-CoA carboxylase beta chain, mitochondrial GO:0016874 K01966
gene-evm.TU.Chr13.574 rna-evm.model.Chr13.574 Chr13 16251540 16268786 PREDICTED: Intraflagellar transport protein 80 homolog GO:0005515 K19678
gene-evm.TU.Chr13.575 rna-evm.model.Chr13.575 Chr13 16271876 16281804 PREDICTED: Putative uncharacterized protein CXorf58 nan K10584
gene-evm.TU.Chr13.576 rna-evm.model.Chr13.576 Chr13 16440609 16441353 PREDICTED: E3 ubiquitin-protein ligase TRIM33 GO:0008270 K12026
gene-evm.TU.Chr13.577 rna-evm.model.Chr13.577 Chr13 16449857 16450255 PREDICTED: tripartite motif-containing protein 45 GO:0008270 K12026
gene-evm.TU.Chr13.579 rna-evm.model.Chr13.579 Chr13 16460071 16518926 PREDICTED: Sodium leak channel non-selective protein GO:0005216;GO:0005245;GO:0005261;GO:0005509;GO:0005891;GO:0006811;GO:0016020;GO:0055085;GO:0070588 K21863

For more detailed data, you can explore the Download section to access the full dataset.