CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.580 rna-evm.model.Chr13.580 Chr13 16522185 16524388 uncharacterized protein nan K08976
gene-evm.TU.Chr13.581 rna-evm.model.Chr13.581 Chr13 16533425 16537891 PREDICTED: Zinc finger protein 648 GO:0003676 K22402
gene-evm.TU.Chr13.582 rna-evm.model.Chr13.582 Chr13 16544900 16548178 PREDICTED: E3 ubiquitin-protein ligase TRIM36 GO:0008270 K12026
gene-evm.TU.Chr13.583 rna-evm.model.Chr13.583 Chr13 16556915 16563082 uncharacterized protein nan K19607
gene-evm.TU.Chr13.585 rna-evm.model.Chr13.585 Chr13 16696634 16701437 PREDICTED: Putative serine protease K12H4.7 GO:0006508;GO:0008236 K09649
gene-evm.TU.Chr13.586 rna-evm.model.Chr13.586 Chr13 16702759 16708531 PREDICTED: Putative serine protease K12H4.7 GO:0006508;GO:0008236 K09649
gene-evm.TU.Chr13.587 rna-evm.model.Chr13.587 Chr13 16709339 16711165 PREDICTED: Potassium voltage-gated channel protein Shal GO:0005216;GO:0005249;GO:0005515;GO:0006811;GO:0006813;GO:0008076;GO:0016020;GO:0051260;GO:0055085 K04887
gene-evm.TU.Chr13.588 rna-evm.model.Chr13.588 Chr13 16714702 16740966 PREDICTED: Ras GTPase-activating protein 3 GO:0035556;GO:0043087 K12380
gene-evm.TU.Chr13.589 rna-evm.model.Chr13.589 Chr13 16751016 16756002 PREDICTED: Pogo transposable element with KRAB domain nan K07483
gene-evm.TU.Chr13.59 rna-evm.model.Chr13.59 Chr13 1826200 1838618 PREDICTED: THAP domain-containing protein 11 nan K16461

For more detailed data, you can explore the Download section to access the full dataset.