CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.556 rna-evm.model.Chr13.556 Chr13 15875392 15877086 PREDICTED: Toll-like receptor 4 GO:0001819;GO:0002755;GO:0004888;GO:0005515;GO:0007165;GO:0016020;GO:0034146;GO:0042742;GO:0045087;GO:0001817 K10160
gene-evm.TU.Chr13.557 rna-evm.model.Chr13.557 Chr13 15881467 15914435 PREDICTED: Cell division cycle protein 16 homolog GO:0005515 K03353
gene-evm.TU.Chr13.558 rna-evm.model.Chr13.558 Chr13 15914607 15925764 PREDICTED: A-kinase anchor protein 14 nan K16530
gene-evm.TU.Chr13.559 rna-evm.model.Chr13.559.1 Chr13 15927938 15944242 PREDICTED: Uncharacterized protein CFAP97D1 nan K25531
gene-evm.TU.Chr13.56 rna-evm.model.Chr13.56 Chr13 1718256 1718822 PREDICTED: junctophilin nan K24512
gene-evm.TU.Chr13.561 rna-evm.model.Chr13.561 Chr13 15949018 15951665 PREDICTED: tripartite motif-containing protein 56 [EC:2.3.2.27] GO:0008270 K12026
gene-evm.TU.Chr13.562 rna-evm.model.Chr13.562 Chr13 15952756 15973122 PREDICTED: A disintegrin and metalloproteinase with thrombospondin motifs 18 GO:0004222;GO:0006508 K08617
gene-evm.TU.Chr13.564 rna-evm.model.Chr13.564 Chr13 15981711 16012509 PREDICTED: Toll-like receptor 4 GO:0005515 K10160
gene-evm.TU.Chr13.565 rna-evm.model.Chr13.565 Chr13 16023917 16028929 PREDICTED: Toll-like receptor 4 GO:0005515 K10160
gene-evm.TU.Chr13.568 rna-evm.model.Chr13.568 Chr13 16068182 16145360 PREDICTED: Annulin GO:0003810;GO:0018149 K05619

For more detailed data, you can explore the Download section to access the full dataset.