CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.543 rna-evm.model.Chr13.543 Chr13 15704931 15705287 uncharacterized protein nan nan
gene-evm.TU.Chr13.545 rna-evm.model.Chr13.545 Chr13 15715414 15715761 uncharacterized protein nan nan
gene-evm.TU.Chr13.547 rna-evm.model.Chr13.547 Chr13 15774286 15774972 PREDICTED: ATP-binding cassette, subfamily C (CFTR/MRP), member 4 nan K06395
gene-evm.TU.Chr13.549 rna-evm.model.Chr13.549 Chr13 15836368 15837120 uncharacterized protein GO:0003676;GO:0008270 K09250
gene-evm.TU.Chr13.55 rna-evm.model.Chr13.55 Chr13 1696539 1697995 PREDICTED: CD109 antigen nan nan
gene-evm.TU.Chr13.550 rna-evm.model.Chr13.550 Chr13 15841918 15843203 PREDICTED: BTB/POZ domain-containing protein KCTD7 GO:0005515;GO:0051260 K21917
gene-evm.TU.Chr13.551 rna-evm.model.Chr13.551 Chr13 15848106 15850448 PREDICTED: BTB/POZ domain-containing protein KCTD7 GO:0051260 K21917
gene-evm.TU.Chr13.552 rna-evm.model.Chr13.552 Chr13 15853441 15859310 PREDICTED: Carbohydrate sulfotransferase 11 GO:0008146;GO:0016020;GO:0016051 K01017
gene-evm.TU.Chr13.554 rna-evm.model.Chr13.554 Chr13 15872932 15873738 PREDICTED: staphylococcal nuclease domain-containing protein 1 nan K10198
gene-evm.TU.Chr13.555 rna-evm.model.Chr13.555 Chr13 15874235 15875293 PREDICTED: Toll-like receptor 4 GO:0005515 K10160

For more detailed data, you can explore the Download section to access the full dataset.