CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.531 rna-evm.model.Chr13.531 Chr13 15522732 15523616 PREDICTED: GTPase IMAP family member 9 GO:0005525 K06946
gene-evm.TU.Chr13.533 rna-evm.model.Chr13.533 Chr13 15563160 15563489 PREDICTED: solute carrier family 15, member 5 nan nan
gene-evm.TU.Chr13.534 rna-evm.model.Chr13.534 Chr13 15581219 15582049 PREDICTED: GTPase IMAP family member 9 GO:0005525 K06946
gene-evm.TU.Chr13.535 rna-evm.model.Chr13.535 Chr13 15593825 15599741 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr13.536 rna-evm.model.Chr13.536 Chr13 15615625 15627124 PREDICTED: Telomerase Cajal body protein 1 GO:0005515 K23314
gene-evm.TU.Chr13.537 rna-evm.model.Chr13.537 Chr13 15651101 15652411 uncharacterized protein nan nan
gene-evm.TU.Chr13.539 rna-evm.model.Chr13.539 Chr13 15689829 15696512 PREDICTED: Cartilage intermediate layer protein 1 nan K24436
gene-evm.TU.Chr13.54 rna-evm.model.Chr13.54 Chr13 1665216 1691471 uncharacterized protein nan nan
gene-evm.TU.Chr13.541 rna-evm.model.Chr13.541 Chr13 15702794 15704376 PREDICTED: Cartilage intermediate layer protein 1 nan K24436
gene-evm.TU.Chr13.542 rna-evm.model.Chr13.542 Chr13 15704428 15704817 PREDICTED: cartilage intermediate layer protein 1-like nan K24436

For more detailed data, you can explore the Download section to access the full dataset.