CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.512_evm.TU.Chr13.513 rna-evm.model.Chr13.512_evm.model.Chr13.513 Chr13 14718559 14768724 PREDICTED: G-protein coupled receptor GRL101 GO:0004930;GO:0005515;GO:0007186;GO:0016020 K04307
gene-evm.TU.Chr13.517 rna-evm.model.Chr13.517 Chr13 14920575 14921232 PREDICTED: zinc finger MYM-type protein 2-like nan K08602
gene-evm.TU.Chr13.518 rna-evm.model.Chr13.518 Chr13 14921326 14922138 PREDICTED: BTB/POZ domain-containing protein KCTD1/15 nan K04763
gene-evm.TU.Chr13.519 rna-evm.model.Chr13.519 Chr13 14958626 14963231 PREDICTED: BTB/POZ domain-containing protein KCTD7 GO:0005515;GO:0051260 K21916
gene-evm.TU.Chr13.52 rna-evm.model.Chr13.52 Chr13 1546687 1558412 PREDICTED: Mariner Mos1 transposase nan K07494
gene-evm.TU.Chr13.520 rna-evm.model.Chr13.520 Chr13 15060169 15109315 PREDICTED: Retinal guanylyl cyclase 2 GO:0004672;GO:0005524;GO:0006468;GO:0009190;GO:0016849;GO:0035556 K12322
gene-evm.TU.Chr13.523 rna-evm.model.Chr13.523 Chr13 15155732 15168035 PREDICTED: Retinal guanylyl cyclase 1 GO:0004672;GO:0005524;GO:0006468 K12322
gene-evm.TU.Chr13.527 rna-evm.model.Chr13.527 Chr13 15343914 15345715 PREDICTED: ATP-dependent DNA helicase PIF1 GO:0000723;GO:0003678;GO:0006281 K15255
gene-evm.TU.Chr13.529 rna-evm.model.Chr13.529 Chr13 15497227 15502010 PREDICTED: M-phase inducer phosphatase GO:0004725;GO:0006470;GO:1902751 K05866
gene-evm.TU.Chr13.530 rna-evm.model.Chr13.530 Chr13 15511499 15513364 PREDICTED: GTPase IMAP family member 9 GO:0005525 K06946

For more detailed data, you can explore the Download section to access the full dataset.