CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.500 rna-evm.model.Chr13.500 Chr13 14182482 14183105 PREDICTED: Serpin B3 GO:0005615 K23425
gene-evm.TU.Chr13.501 rna-evm.model.Chr13.501 Chr13 14183144 14183346 PREDICTED: Serpin B10 GO:0005615 K13963
gene-evm.TU.Chr13.503 rna-evm.model.Chr13.503 Chr13 14464771 14466053 PREDICTED: Repetitive proline-rich cell wall protein 2 nan K25802
gene-evm.TU.Chr13.504 rna-evm.model.Chr13.504 Chr13 14466953 14475997 PREDICTED: glucuronyl/N-acetylglucosaminyl transferase EXT1 [EC:2.4.1.224 2.4.1.225] nan K24901
gene-evm.TU.Chr13.506 rna-evm.model.Chr13.506.2 Chr13 14557479 14667638 PREDICTED: Protein muscleblind GO:0046872 K14943
gene-evm.TU.Chr13.507 rna-evm.model.Chr13.507 Chr13 14679401 14691181 PREDICTED: Protein MIS12 homolog GO:0000278;GO:0000775;GO:0005634 K11543
gene-evm.TU.Chr13.509 rna-evm.model.Chr13.509 Chr13 14701659 14703454 uncharacterized protein nan nan
gene-evm.TU.Chr13.51 rna-evm.model.Chr13.51 Chr13 1545906 1546630 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K11433
gene-evm.TU.Chr13.510 rna-evm.model.Chr13.510 Chr13 14705930 14707776 uncharacterized protein nan nan
gene-evm.TU.Chr13.511 rna-evm.model.Chr13.511 Chr13 14710822 14712797 uncharacterized protein nan K03415

For more detailed data, you can explore the Download section to access the full dataset.