CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.489 rna-evm.model.Chr13.489 Chr13 14002893 14008322 uncharacterized protein nan K12026
gene-evm.TU.Chr13.490 rna-evm.model.Chr13.490 Chr13 14023986 14032448 uncharacterized protein nan nan
gene-evm.TU.Chr13.491 rna-evm.model.Chr13.491 Chr13 14038913 14039332 PREDICTED: Putative apoptosis inhibitor ORF99 nan K04725
gene-evm.TU.Chr13.493 rna-evm.model.Chr13.493 Chr13 14048878 14052566 uncharacterized protein nan nan
gene-evm.TU.Chr13.494 rna-evm.model.Chr13.494 Chr13 14057795 14074726 PREDICTED: Ninjurin-2 GO:0007155;GO:0016020;GO:0042246 K15270
gene-evm.TU.Chr13.495 rna-evm.model.Chr13.495 Chr13 14089470 14122945 uncharacterized protein nan nan
gene-evm.TU.Chr13.497 rna-evm.model.Chr13.497 Chr13 14143841 14145151 uncharacterized protein nan nan
gene-evm.TU.Chr13.499 rna-evm.model.Chr13.499.1 Chr13 14165282 14178234 PREDICTED: Serine/arginine-rich splicing factor 4 GO:0003676 K12893
gene-evm.TU.Chr13.5 rna-evm.model.Chr13.5 Chr13 285882 289855 PREDICTED: Protein FAM72A nan K10595
gene-evm.TU.Chr13.50 rna-evm.model.Chr13.50 Chr13 1512023 1537359 PREDICTED: N-lysine methyltransferase KMT5A GO:0005515 K11428

For more detailed data, you can explore the Download section to access the full dataset.