CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.469 rna-evm.model.Chr13.469 Chr13 13508246 13517218 PREDICTED: Histone-lysine N-methyltransferase SETMAR nan K21406
gene-evm.TU.Chr13.472 rna-evm.model.Chr13.472 Chr13 13556843 13557810 PREDICTED: RNA-directed DNA polymerase from mobile element jockey nan K00986
gene-evm.TU.Chr13.473 rna-evm.model.Chr13.473 Chr13 13582937 13626520 PREDICTED: Peripheral plasma membrane protein CASK nan K06103
gene-evm.TU.Chr13.474 rna-evm.model.Chr13.474 Chr13 13634519 13638757 PREDICTED: Large tegument protein deneddylase nan K21075
gene-evm.TU.Chr13.475 rna-evm.model.Chr13.475 Chr13 13682343 13804384 PREDICTED: Peripheral plasma membrane protein CASK GO:0004672;GO:0005524;GO:0006468 K06103
gene-evm.TU.Chr13.477 rna-evm.model.Chr13.477 Chr13 13810673 13825167 uncharacterized protein nan nan
gene-evm.TU.Chr13.48 rna-evm.model.Chr13.48 Chr13 1436432 1444330 PREDICTED: Nipped-B-like protein B nan K12822
gene-evm.TU.Chr13.480 rna-evm.model.Chr13.480 Chr13 13845424 13857673 uncharacterized protein nan nan
gene-evm.TU.Chr13.486 rna-evm.model.Chr13.486 Chr13 13875421 13905338 PREDICTED: periphilin-1 nan K01421
gene-evm.TU.Chr13.488 rna-evm.model.Chr13.488 Chr13 13913655 13994309 uncharacterized protein nan nan

For more detailed data, you can explore the Download section to access the full dataset.