CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr1.1913 rna-evm.model.Chr1.1913 Chr1 60975299 60984612 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.1914 rna-evm.model.Chr1.1914 Chr1 60989834 60992536 PREDICTED: Transposable element Tc1 transposase nan K07494
gene-evm.TU.Chr1.1915 rna-evm.model.Chr1.1915 Chr1 60992688 61004435 PREDICTED: Heat shock 70 kDa protein 12B nan K04043
gene-evm.TU.Chr1.1918 rna-evm.model.Chr1.1918 Chr1 61044504 61057625 PREDICTED: myosin heavy chain nan K22257
gene-evm.TU.Chr1.1919 rna-evm.model.Chr1.1919 Chr1 61144622 61159628 PREDICTED: myosin heavy chain nan K12026
gene-evm.TU.Chr1.192 rna-evm.model.Chr1.192 Chr1 6045660 6050037 PREDICTED: Heat shock 70 kDa protein 12A nan K04043
gene-evm.TU.Chr1.1920 rna-evm.model.Chr1.1920 Chr1 61189403 61214368 PREDICTED: Laminin-like protein epi-1 nan K21954
gene-evm.TU.Chr1.1922 rna-evm.model.Chr1.1922 Chr1 61219930 61226782 PREDICTED: myosin heavy chain nan K07595
gene-evm.TU.Chr1.1924 rna-evm.model.Chr1.1924 Chr1 61267879 61282613 PREDICTED: myosin heavy chain nan K10652
gene-evm.TU.Chr1.1925 rna-evm.model.Chr1.1925 Chr1 61310789 61324175 PREDICTED: Rho-associated protein kinase 2 [EC:2.7.11.1] nan K08883

For more detailed data, you can explore the Download section to access the full dataset.