CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.459 rna-evm.model.Chr13.459 Chr13 13129313 13139480 uncharacterized protein nan K18926
gene-evm.TU.Chr13.46 rna-evm.model.Chr13.46 Chr13 1395624 1395947 PREDICTED: CD109 antigen nan nan
gene-evm.TU.Chr13.460 rna-evm.model.Chr13.460 Chr13 13143907 13152807 PREDICTED: Beta carbonic anhydrase 1 GO:0004089;GO:0008270 K01673
gene-evm.TU.Chr13.461 rna-evm.model.Chr13.461 Chr13 13171717 13175391 PREDICTED: heat shock 70 kDa protein 12B-like nan nan
gene-evm.TU.Chr13.462 rna-evm.model.Chr13.462 Chr13 13179983 13298518 PREDICTED: Filamin-B GO:0005515 K04437
gene-evm.TU.Chr13.463 rna-evm.model.Chr13.463.1 Chr13 13326515 13377075 PREDICTED: Filamin-A GO:0005515 K04437
gene-evm.TU.Chr13.464 rna-evm.model.Chr13.464 Chr13 13384067 13396161 PREDICTED: Protein wech GO:0008270 K12035
gene-evm.TU.Chr13.465 rna-evm.model.Chr13.465 Chr13 13403922 13405317 uncharacterized protein nan nan
gene-evm.TU.Chr13.467 rna-evm.model.Chr13.467 Chr13 13431582 13431901 uncharacterized protein GO:0003677;GO:0006355 K07499
gene-evm.TU.Chr13.468 rna-evm.model.Chr13.468 Chr13 13461457 13504019 PREDICTED: Probable calcium-binding protein CML17 GO:0005509 K02183

For more detailed data, you can explore the Download section to access the full dataset.