CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.444 rna-evm.model.Chr13.444 Chr13 12828015 12845822 PREDICTED: Neurocan core protein GO:0005509 K06794
gene-evm.TU.Chr13.445 rna-evm.model.Chr13.445 Chr13 12851142 12862276 PREDICTED: C1q-related factor nan K24236
gene-evm.TU.Chr13.446 rna-evm.model.Chr13.446 Chr13 12864379 12881091 PREDICTED: NKAP family protein CG6066 GO:0003682;GO:0007219;GO:0045892 K25931
gene-evm.TU.Chr13.447 rna-evm.model.Chr13.447 Chr13 12881531 12888533 PREDICTED: ATP-dependent DNA helicase PIF1 nan K15255
gene-evm.TU.Chr13.448 rna-evm.model.Chr13.448 Chr13 12893285 12895639 PREDICTED: DNA transposase THAP9 [EC:2.7.7.-] GO:0004803;GO:0006313 K23209
gene-evm.TU.Chr13.449 rna-evm.model.Chr13.449 Chr13 12902455 12977675 PREDICTED: Fibropellin-1 GO:0005509 K02599
gene-evm.TU.Chr13.450 rna-evm.model.Chr13.450 Chr13 12986778 13011417 PREDICTED: NKAP family protein CG6066 GO:0003682;GO:0007219;GO:0045892 K25931
gene-evm.TU.Chr13.451 rna-evm.model.Chr13.451 Chr13 13010979 13034075 PREDICTED: Ubiquitin carboxyl-terminal hydrolase 11 GO:0016579;GO:0004843 K11835
gene-evm.TU.Chr13.452 rna-evm.model.Chr13.452 Chr13 13034140 13042505 PREDICTED: Activating signal cointegrator 1 complex subunit 1 GO:0003676;GO:0003723 K18666
gene-evm.TU.Chr13.458 rna-evm.model.Chr13.458 Chr13 13072995 13087630 PREDICTED: Protein IWS1 homolog GO:0005634 K17498

For more detailed data, you can explore the Download section to access the full dataset.