CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.429 rna-evm.model.Chr13.429 Chr13 12341887 12343005 PREDICTED: Protein ANTAGONIST OF LIKE HETEROCHROMATIN PROTEIN 1 nan K23222
gene-evm.TU.Chr13.43 rna-evm.model.Chr13.43 Chr13 1280957 1285415 uncharacterized protein nan nan
gene-evm.TU.Chr13.431 rna-evm.model.Chr13.431 Chr13 12356165 12365186 PREDICTED: BTB and MATH domain-containing protein 38 GO:0005515 K10478
gene-evm.TU.Chr13.433 rna-evm.model.Chr13.433 Chr13 12399452 12421990 PREDICTED: importin-4 nan K02872
gene-evm.TU.Chr13.435 rna-evm.model.Chr13.435 Chr13 12439811 12451072 PREDICTED: Interleukin-1 receptor-associated kinase 4 GO:0004672;GO:0005524;GO:0006468 K04733
gene-evm.TU.Chr13.437 rna-evm.model.Chr13.437.2 Chr13 12491346 12508192 PREDICTED: Acetylcholinesterase GO:0004104 K01049
gene-evm.TU.Chr13.44 rna-evm.model.Chr13.44 Chr13 1304285 1334153 PREDICTED: Alpha-1,3-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase GO:0006486;GO:0008375 K00726
gene-evm.TU.Chr13.440 rna-evm.model.Chr13.440 Chr13 12728415 12749979 PREDICTED: Angiopoietin-2 nan K10104
gene-evm.TU.Chr13.442 rna-evm.model.Chr13.442 Chr13 12800030 12801909 PREDICTED: Heparan-sulfate 6-O-sulfotransferase 3-B GO:0008146;GO:0016020 K08103
gene-evm.TU.Chr13.443 rna-evm.model.Chr13.443 Chr13 12814305 12821375 PREDICTED: NF-kappa-B-activating protein GO:0003682;GO:0007219;GO:0045892 K25931

For more detailed data, you can explore the Download section to access the full dataset.