CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.404 rna-evm.model.Chr13.404 Chr13 11649451 11702118 PREDICTED: Collagen alpha-1(IV) chain GO:0005201;GO:0005581 K06237
gene-evm.TU.Chr13.406 rna-evm.model.Chr13.406 Chr13 11723204 11733069 PREDICTED: mannose receptor, C type nan K06560
gene-evm.TU.Chr13.407 rna-evm.model.Chr13.407 Chr13 11746646 11752715 PREDICTED: trichohyalin nan K25727
gene-evm.TU.Chr13.408 rna-evm.model.Chr13.408 Chr13 11755618 11764739 PREDICTED: Versican core protein (Fragments) GO:0005509 K06794
gene-evm.TU.Chr13.417 rna-evm.model.Chr13.417 Chr13 12002042 12010108 uncharacterized protein nan nan
gene-evm.TU.Chr13.419 rna-evm.model.Chr13.419 Chr13 12033998 12045635 PREDICTED: Interferon-induced protein 44-like nan K03595
gene-evm.TU.Chr13.421 rna-evm.model.Chr13.421 Chr13 12071321 12076051 PREDICTED: Pleckstrin homology domain-containing family B member 2 GO:0016020 K23857
gene-evm.TU.Chr13.423 rna-evm.model.Chr13.423 Chr13 12146487 12148736 uncharacterized protein nan K22499
gene-evm.TU.Chr13.424 rna-evm.model.Chr13.424 Chr13 12167290 12170984 PREDICTED: BTB and MATH domain-containing protein 38 GO:0005515 K10444
gene-evm.TU.Chr13.428 rna-evm.model.Chr13.428 Chr13 12338616 12340670 PREDICTED: Trihelix transcription factor GTL1 nan K01587

For more detailed data, you can explore the Download section to access the full dataset.