CBMDAS Database

About the CBMDAS Database

The CBMDAS database is a comprehensive repository of genomic information related to marine species. This database contains detailed data on various genes, their descriptions, and the associated genomic locations. It aims to support marine biology research by providing a rich source of genomic data for researchers.

Data Structure

Here is an overview of the structure of the data:

Field Description
Gene Id The name of the gene (e.g., BRCA1, TP53).
Transcript Id A brief description of the gene, including its function and relevance to marine biology.
CHROM The chromosomal location or specific genomic coordinates of the gene.
Start The location of the gene start on the chromosome.
End The location of the end of the gene on the chromosome.
Description Description of a clam gene.
GO Term The GO term to which the gene belongs.
KO KEGG data corresponding to genes are KO.

Gene Information

Gene Id Transcript Id CHROM Start End Description GO Term KO
gene-evm.TU.Chr13.392 rna-evm.model.Chr13.392 Chr13 11427652 11437238 PREDICTED: Integral membrane protein GPR180 GO:0007186;GO:0019236 K18967
gene-evm.TU.Chr13.393 rna-evm.model.Chr13.393 Chr13 11439323 11441441 PREDICTED: Kappa-type opioid receptor GO:0004930;GO:0007186;GO:0016020 K04202
gene-evm.TU.Chr13.394 rna-evm.model.Chr13.394 Chr13 11445176 11447282 PREDICTED: Tripartite motif-containing protein 2 GO:0008270 K12026
gene-evm.TU.Chr13.395 rna-evm.model.Chr13.395 Chr13 11463070 11472864 PREDICTED: Alpha-mannosidase 2x GO:0004559;GO:0006013 K01231
gene-evm.TU.Chr13.396 rna-evm.model.Chr13.396 Chr13 11481363 11488792 PREDICTED: Obscurin nan K17531
gene-evm.TU.Chr13.397 rna-evm.model.Chr13.397 Chr13 11503338 11528408 PREDICTED: U2 snRNP-associated SURP motif-containing protein GO:0003676;GO:0003723;GO:0006396 K12842
gene-evm.TU.Chr13.398 rna-evm.model.Chr13.398 Chr13 11532953 11540662 PREDICTED: Leucine carboxyl methyltransferase 1 GO:0008168;GO:0032259 K18203
gene-evm.TU.Chr13.399 rna-evm.model.Chr13.399.1 Chr13 11546091 11557138 PREDICTED: DNA repair protein complementing XP-G cells GO:0003677;GO:0003697;GO:0003824;GO:0004518;GO:0004519;GO:0005634;GO:0006281;GO:0006289 K10846
gene-evm.TU.Chr13.401 rna-evm.model.Chr13.401 Chr13 11577124 11578731 PREDICTED: Titin nan nan
gene-evm.TU.Chr13.403 rna-evm.model.Chr13.403 Chr13 11598637 11648317 PREDICTED: Collagen alpha-1(IV) chain GO:0005201;GO:0005581 K06237

For more detailed data, you can explore the Download section to access the full dataset.